German conference on bioinformatics 2004, GCB 2004, October 4-6, 2004, bielefeld, Germany

GI, Gesellschaft für Informatik, Bonn
2004

Contents

Articles

• Dan Gusfield
  Invited talk: phylogenetic networks with constrained and unconstrained recombination
  Pages: 1... Full Text
• Olaf Delgado Friedrichs, Aaron L. Halpern, Ross Lippert, Christian Rausch, Stephan C. Schuster, Daniel H. Huson
  Syntenic layout of two assemblies of related genomes
  Pages: 3-12... Full Text
• Jan E. Gewehr, Niklas Von Öhsen, Ralf Zimmer
  Combining secondary structure element alignment and profile-profile alignment for fold recognition
  Pages: 8 p.... Full Text
• Sebastian Böcker
  Weighted sequencing from compomers: DNA de-novo sequencing from mass spectrometry data in the presence of false negative peaks
  Pages: 13-24... Full Text
• Burkhard Morgenstern, S. J. Prohaska, N. Werner, J. Weyer-Menkhoff, I. Schneider, A. R. Subramanian, Peter F. Stadler
  Multiple sequence alignment with user-defined constraints
  Pages: 25-36... Full Text
• James Slack, Kristian Hildebrand, Tamara Munzner, Katherine St. John
  Sequencejuxtaposer: fluid navigation for large-scale sequence comparison in context
  Pages: 37-42... Full Text
• R. Pudimat, Ernst-Günter Schukat-Talamazzini, Rolf Backofen
  Feature based representation and detection of transcription factor binding sites
  Pages: 43-52... Full Text
• M. Beckstette, Dirk Strothmann, R. Homann, Robert Giegerich, Stefan Kurtz
  Possumsearch: fast and sensitive matching of position specific scoring matrices using enhanced suffix arrays
  Pages: 53-64... Full Text
• Hanjo Täubig, Arno Buchner, Jan Griebsch
  A method for fast approximate searching of polypeptide structures in the PDB
  Pages: 65-74... Full Text
• Nicole Isermann, Michael Weitzel, Wolfgang Wiechert
  Kleene's theorem and the solution of metabolic carbon labeling systems
  Pages: 75-84... Full Text
• Helena Stömbergsson, Peteris Prusis, Herman Midelfart, Jarl E. S. Wikberg, Jan Komorowski
  Proteochemometrics modeling of receptor-ligand interactions using rough sets
  Pages: 85-94... Full Text
• Matthias Scholz, Yves Gibon, Mark Stitt, Joachim Selbig
  Independent components analysis of starch deficient pgm mutants
  Pages: 95-104... Full Text
• Szymon M. Kielbasa, Nils Blüthgen, Hanspeter Herzel
  Genome-wide analysis of functions regulated by sets of transcription factors
  Pages: 105-114... Full Text
• Thomas Götz, Andreas Bohne-Lang, Martin Frank, Klaus Karl Lohmann, Alexander Loss, T. Lütteke, Claus-Wilhelm Von Der Lieth
  Glycosciences.de: an Internet portal for glyco-related data from open ACC:ess resources
  Pages: 115-120... Full Text
• Gert Vriend
  Invited talk: information flux through proteins
  Pages: 121-122... Full Text
• Fabian Bös, N. Atalia Currle-Linde, Peggy Lindner, Rolf D. Schmid, Jürgen Pleiss
  High-throughput molecular dynamics simulations: long and short range effects of mutations on substrate specificity
  Pages: 123-130... Full Text
• Nils Weskamp, Eyke Hüllermeier, Daniel Kuhn, Gerhard Klebe
  Graph alignments: A new concept to detect conserved regions in protein active sites
  Pages: 131-140... Full Text
• Guido Dieterich, M. Kvesic, Dietmar Schomburg, Dirk W. Heinz, Joachim Reichelt
  Integrating public databases into an existing protein visualization and modeling program - BRAGI
  Pages: 149-155... Full Text
• Michael Gagen
  Invited talk: inherent size and complexity constraints in prokaryote gene regulatory networks
  Pages: 157... Full Text
• Christoph Best, Ralf Zimmer, Joannis Apostolakis
  Probabilistic methods for predicting protein functions in protein-protein interaction networks
  Pages: 159-168... Full Text
• Ralph Delfs, Andreas Doms, Alexander Kozlenkov, Michael Schroeder
  Gopubmed: ontology-based literature search applied to gene ontology and pubmed
  Pages: 169-178... Full Text
• Michael Beckstette, Alexander Sczyrba, Paul M. Selzer
  Genlight: an interactive system for high-throughput sequence analysis and comparative genomics
  Pages: 179-186... Full Text
• Walter Schubert
  Invited talk: fast track to disease-specific drugs: the impact of in-situ proteomics imaging (Toponomics)
  Pages: 187-188... Full Text
• Alexander Kel, Nico Voss, Tatyana Konovalova, Dmitri Tchekmenev, Philipp Wabnitz, Olga Kelmargoulis, Edgar Wingender
  From composite patters to pathways - prediction of key regulators of gene expression
  Pages: 189-198... Full Text
• Dirk Koschützki, Falk Schreiber
  Comparison of centralities for biological networks
  Pages: 199-206... Full Text
• Caroline Thurner, Ivo L. Hofacker, Peter F. Stadler
  Conserved RNA pseudoknots
  Pages: 207-216... Full Text
• Huiquan Wang, Craig J. Benham
  Superhelically destabilized sites in the E. Coli genome: implications for promoter prediction in prokaryotes
  Pages: 217-226... Full Text
• Peter F. Arndt
  Identification and measurement of neigbor dependent nucleotide substitution processes
  Pages: 227-234... Full Text

GI, Gesellschaft für Informatik, Bonn
ISBN 3-88579-382-2