Gesellschaft für Informatik e.V.

Lecture Notes in Informatics

German conference on bioinformatics 2010 P-173, 113-121 (2010).

Gesellschaft für Informatik, Bonn

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Finding optimal sets of enriched regions in chip-seq data

Andreas Gogol-Döring and Wei Chen


The main challenge when analyzing ChIP-Seq data is the identification of DNA-protein binding sites by finding genomic regions that are enriched with sequencing reads. We present a new tool called qips especially suited for processing ChIP-Seq data containing broader enriched regions. Our tool certainly finds all enriched regions that are not exceeded by higher significant alternatives.

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Gesellschaft für Informatik, Bonn
ISBN 978-3-88579-267-3

Last changed 04.10.2013 18:32:36