German conference on bioinformatics 2009

Gesellschaft für Informatik, Bonn
2009

Contents

Articles

• R. Lorenz, C. Flamm, I. L. Hofacker
  2D projections of RNA folding landscapes
  Pages: 11-20... Full Text
• T. Fober, M. Mernberger, R. Moritz, E. H\ddot Ullermeier
  Graph-kernels for the comparative analysis of protein active sites
  Pages: 21-32... Full Text
• I. Wohlers, L. Petzold, F. S. Domingues, G. W. Klau
  Aligning protein structures using distance matrices and combinatorial optimization
  Pages: 33-44... Full Text
• T. Alexandrov
  Self-taught learning for classification of mass spectrometry data: a case study of colorectal cancer
  Pages: 45-54... Full Text
• J. Perner, A. Altmann, T. Lengauer
  Semi-supervised learning for improving prediction of HIV drug resistance
  Pages: 55-66... Full Text
• T. Fester, F. Schreiber, M. Strickert
  CUDA-based multi-core implementation of MDS-based bioinformatics algorithms
  Pages: 67-80... Full Text
• L. Royer, C. Plake, M. Schroeder
  Identifying hot cancer and novel novel cell-cycle genes from literature
  Pages: 81-92... Full Text
• T. Ingalls, G. Martius, M. Marz, S. J. Prohaska
  Converting DNA to music: composalign
  Pages: 93-104... Full Text
• H. Rohn, C. Klukas, F. Schreiber
  Integration and visualisation of multimodal biological data
  Pages: 105-116... Full Text
• E. Gorrón, F. Rodríguez, D. Bernal, S. Restrepo, J. Tohme
  A new method for the design of degenerate primers and its use to identify homologues of apomixis - associated genes in brachiaria
  Pages: 117-132... Full Text
• O. Stegle, K. Denby, D. Wild, S. Mchattie, A. Meade, Z. Ghahramani, K. Borgwardt
  Discovering temporal patterns of differential gene expression in microarray time series
  Pages: 133-142... Full Text
• J. Song, C. -C. Hong, Y. Zhang, L. Buttitta, B. Edgar
  Comparative generalized logic modeling reveals differential gene interactions during cell cycle exit in drosophila wing development
  Pages: 143-152... Full Text
• A. Chokkathukalam, M. Poolman, C. Ferrazzi, D. Fell
  Expression profiles of metabolic models to predict compartmentation of enzymes in multi-compartmental systems
  Pages: 153-162... Full Text
• Z. Ouyang, M. Song
  Comparative identification of differential interactions from trajectories of dynamic biological networks
  Pages: 163-172... Full Text
• H. Horai, M. Arita, Y. Ojima, Y. Nihei, S. Kanaya, T. Nishioka
  Traceable analysis of multiple-stage mass spectra through precursor-product annotations
  Pages: 173-178... Full Text
• C. Kaleta, L. F. De Figueiredo, J. Behre, S. Schuster
  Efmevolver: computing elementary flux modes in genome-scale metabolic networks
  Pages: 179-190... Full Text
• M. Kronfeld, A. Dr\ddot Ager, M. Aschoff, A. Zell
  On the benefits of multimodal optimization for metabolic network modeling
  Pages: 191-200... Full Text
• A. K. Dehof, A. Rurainski, H. -P. Lenhof, A. Hildebrandt
  Automated Bond order assignment as an optimization problem
  Pages: 201-210... Full Text
• P. Menzel, J. Gorodkin, P. F. Stadler
  Maximum likelihood estimation of weight matrices for targeted homology search
  Pages: 211-220... Full Text

Gesellschaft für Informatik, Bonn
ISBN 978-3-88579-251-2