Gesellschaft für Informatik e.V.

Lecture Notes in Informatics


German Conference on Bioinformatics 2004, GCB 2004, October 4-6, 2004, Bielefeld, Germany P-53, 169-178 (2004).

GI, Gesellschaft für Informatik, Bonn
2004


Editors

Robert Giegerich (ed.), Jens Stoye (ed.)


Copyright © GI, Gesellschaft für Informatik, Bonn

Contents

Gopubmed: ontology-based literature search applied to gene ontology and pubmed

Ralph Delfs , Andreas Doms , Alexander Kozlenkov and Michael Schroeder

Abstract


The biomedical literature grows at a tremendous rate, so that finding the relevant literature is becoming more and more difficult. To address this problem we introduce ontology-based literature search, which structures search results thorugh the categories of an ontology. We develop and implement GoP- ubMed, which submits keywords to PubMed, extracts GeneOntology-terms from the retrieved abstracts, and presents the relevant sub-ontology for browsing. For GoPubMed we develop a novel term extraction algorithm and evaluate its performance. GoPubMed is available at www.gopubmed.org


Full Text: PDF

GI, Gesellschaft für Informatik, Bonn
ISBN 3-88579-382-2


Last changed 04.10.2013 18:03:58