Gesellschaft für Informatik e.V.

Lecture Notes in Informatics


German Conference on Bioinformatics 2004, GCB 2004, October 4-6, 2004, Bielefeld, Germany P-53, 149-155 (2004).

GI, Gesellschaft für Informatik, Bonn
2004


Editors

Robert Giegerich (ed.), Jens Stoye (ed.)


Copyright © GI, Gesellschaft für Informatik, Bonn

Contents

Integrating public databases into an existing protein visualization and modeling program - BRAGI

Guido Dieterich , M. Kvesic , Dietmar Schomburg , Dirk W. Heinz and Joachim Reichelt

Abstract


BRAGI offers an efficient visual access to sequence alignment information, 3D alignments and annotated protein structure-function correlations. As a new feature we have mapped information from SWISS- PROT and InterPro to individual entries of the PDB. 3D structural alignments from DALI database were converted to XML files for easy access in BRAGI. BRAGI provides interactive access to NCBI-Blast and the DALI server. Linking and visualizing different types of information hopefully allow the structure function of proteins to be appreciated more intuitively. Availability: http://bragi.gbf.de Cost: Freeware, but you have to sign a license Copyright: GBF Braunschweig and CUBIC Köln, databases by their owners. Some databases have restricted access for commercial usage (e.g. DALI or SWISS- PROT)


Full Text: PDF

GI, Gesellschaft für Informatik, Bonn
ISBN 3-88579-382-2


Last changed 04.10.2013 18:03:57